hrvoje_hr I found out that in all of these circumstances all the data remained written in the database tables, but somehow ignored by the extension.
criteria:recalculate should solve the issue, but it only updates rows in CRITERION_USER table. It should delete them all, then calculate. Solved all issues by manually deleting them, then recalculating
EDIT: I thought about it further, and, actually, deleting all of them would be a bad practice. All users would be spammed by notifications again. But the point still stands, for some reason, affected users are ignored by auto-moderator extension until I delete all their criteria from the database.